SARS-CoV-2 Ligands Database

SIX LIGANDS

Extended PDB ID PDB ID Method Resolution Chain Start End Macromolecules Ligand 1 Ligand 2 Ligand 3 Ligand 4 Ligand 5 Ligand 6
1 pdb_00007e8f 7E8F EM 3.18 A A 13 303 Spike protein S1 N9 H N9 L 368-2 H 368-2 L 604 H 604 L
2 pdb_00007e8f 7E8F EM 3.18 A R 319 541 Spike protein S1 Spike protein S1 N9 H N9 L 368-2 H 368-2 L 604 H
3 pdb_00007x7t 7X7T EM 3.48 A G 324 527 Spike protein S1 X10 light chain X10 heavy chain X17 light chain X17 heavy chain X01 light chain X01 heavy chain
4 pdb_00007x7u 7X7U EM 3.77 A G 324 527 Spike protein S1 X10 light chain X10 heavy chain X17 light chain X17 heavy chain X01 light chain X01 heavy chain
5 pdb_00007jx3 7JX3 X-ray 2.65 A R 328 531 Spike protein S1 Light chain of Fab domain of monoclonal antibody S309 Heavy chain of Fab domain of monoclonal antibody S309 Light chain of Fab domain of monoclonal antibody S2H14 Heavy chain of Fab domain of monoclonal antibody S2H14 Light chain of Fab domain of monoclonal antibody S304 Heavy chain of Fab domain of monoclonal antibody S304
6 pdb_00007r6x 7R6X X-ray 2.95 A R 328 531 Spike protein S1 Monoclonal antibody S304 Fab light chain Monoclonal antibody S304 Fab heavy chain Monoclonal antibody S309 Fab light chain Monoclonal antibody S309 Fab heavy chain Monoclonal antibody S2E12 Fab light chain Monoclonal antibody S2E12 Fab heavy chain
7 pdb_00007x1m 7X1M EM 2.74 A M 333 541 Spike protein S1 S309 Fab light chain S309 Fab heavy chain BD-604 Fab heavy chain BD-604 Fab light chain S304 Fab heavy chain S304 Fab light chain
8 pdb_00008bcz 8BCZ EM 2.90 A R 333 528 Spike protein S1 BA.2-23 heavy chain BA.2-23 light chain COVOX-45 heavy chain COVOX-45 light chain EY6A heavy chain EY6A light chain
9 pdb_00008hws 8HWS EM 2.36 A A 333 528 Spike protein S2' BD-604 Fab Heavy chain BD-604 Fab Light chain S304 Fab Heavy Chain S304 Fab Light Chain S309 Fab Heavy Chain S309 Fab Light Chain
10 pdb_00007whz 7WHZ EM 3.42 A B 333 527 Spike protein S1 XMA04 heavy chain variable domain XMA01 heavy chain variable domain IGL c4029_light_IGKV1-39_IGKJ2 IG c934_light_IGKV1-5_IGKJ1 XMA09 heavy chain variable domain IG c1437_light_IGLV1-40_IGLJ1
11 pdb_00007wi0 7WI0 EM 3.82 A B 333 527 Spike protein S1 XMA04 heavy chain variable domain XMA01 heavy chain variable domain IGL c4029_light_IGKV1-39_IGKJ2 IG c934_light_IGKV1-5_IGKJ1 XMA09 heavy chain variable domain IG c1437_light_IGLV1-40_IGLJ1
12 pdb_00007wp6 7WP6 EM 3.71 A F 333 521 Spike protein S1 36H6 heavy chain 83H7 light chain 83H7 heavy chain 85F7 heavy chain 36H6 light chain 85F7 light chain
13 pdb_00007wp8 7WP8 EM 3.26 A R 335 526 Spike glycoprotein 83H7 light chain 83H7 heavy chain 2B4 heavy chain 2B4 light chain 85F7 heavy chain 85F7 light chain
14 pdb_00007e5r 7E5R EM 3.60 A A/B/C 1 1208 Spike glycoprotein H014 light chain H014 heavy chain P17 heavy chain P17 light chain FC05 light chain FC05 heavy chain
15 pdb_00007e5s 7E5S EM 3.60 A A/B/C 1 1208 Spike glycoprotein H014 light chain H014 heavy chain P17 heavy chain P17 light chain FC05 light chain HB27 light chain
16 pdb_00007e8c 7E8C EM 3.16 A A/B/C 1 1208 Spike glycoprotein 604 H 604 L N9 H 368-2 L 368-2 H N9 L
17 pdb_00008vye 8VYE EM 2.70 A E/K/O 1 1208 Spike glycoprotein S2L20 Heavy Chain S2L20 Light Chain S309 Heavy Chain S309 Light Chain S2X303 Heavy Chain S2X303 Light Chain