SARS-CoV-2 Ligands Database

FULL ACE

A full-length spike protein is the entire, functional protein that protrudes from the viral surface. It includes all its key domains and components:

S1 subunit: Contains the N-Terminal Domain (NTD) and the Receptor-Binding Domain (RBD), which are responsible for attaching to the host cell (e.g., via the ACE2 receptor).

S2 subunit: Contains the fusion machinery, including the fusion peptide, Heptad Repeat 1 (HR1), Heptad Repeat 2 (HR2), and the Transmembrane Domain (TM). This subunit is responsible for fusing the viral and host cell membranes.

For details, please see each domain's page.

Extended PDB ID PDB ID Method Resolution Chain Start End Macromolecules Ligand 1 Ligand 2 Ligand 3
1 pdb_00007ct5 7CT5 EM 4.00 A/B/C 1 1273 Spike glycoprotein Angiotensin-converting enzyme 2 - -
2 pdb_00007dwx 7DWX EM 8.30 E/F/G/H/I/J 1 1273 Spike glycoprotein Sodium-dependent neutral amino acid transporter B(0)AT1 Angiotensin-converting enzyme 2 -
3 pdb_00007dx5 7DX5 EM 3.50 A A/B/C 1 1273 Spike glycoprotein Angiotensin-converting enzyme 2 - -
4 pdb_00007dx6 7DX6 EM 3.00 A A/B/C 1 1273 Spike glycoprotein Angiotensin-converting enzyme 2 - -
5 pdb_00007dx7 7DX7 EM 3.40 A A/B/C 1 1273 Spike glycoprotein Angiotensin-converting enzyme 2 - -
6 pdb_00007dx8 7DX8 EM 2.90 A A/B/C 1 1273 Spike glycoprotein Angiotensin-converting enzyme 2 - -
7 pdb_00007dx9 7DX9 EM 3.60 A A/B/C 1 1273 Spike glycoprotein Angiotensin-converting enzyme 2 - -
8 pdb_00007wgb 7WGB EM 3.50 A A/B/C 1 1273 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
9 pdb_00007wgc 7WGC EM 3.60 A C 1 1273 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
10 pdb_00007xo7 7XO7 EM 3.48 A A/B/C 1 1273 Spike glycoprotein Angiotensin-converting enzyme 2 - -
11 pdb_00007xo8 7XO8 EM 3.48 A A/B/C 1 1273 Spike glycoprotein Angiotensin-converting enzyme 2 - -
12 pdb_00007xo9 7XO9 EM 3.00 A A 1 1273 Spike glycoprotein Angiotensin-converting enzyme 2 - -
13 pdb_00007xoa 7XOA EM 3.20 A A/B/C 1 1273 Spike glycoprotein Angiotensin-converting enzyme 2 - -
14 pdb_00007xob 7XOB EM 3.30 A A/B/C 1 1273 Spike glycoprotein Angiotensin-converting enzyme 2 - -
15 pdb_00007xoc 7XOC EM 3.00 A A 1 1273 Spike glycoprotein Angiotensin-converting enzyme 2 - -
16 pdb_00007yr2 7YR2 EM 3.30 A C/D/E 1 1273 Spike glycoprotein Angiotensin-converting enzyme 2 - -
17 pdb_00007yr3 7YR3 EM 3.52 A B/C/F 1 1273 Spike glycoprotein Angiotensin-converting enzyme 2 - -
18 pdb_00008hfz 8HFZ EM 2.71 A A/B/C 1 1217 Spike glycoprotein Angiotensin-converting enzyme - -
19 pdb_00008wlo 8WLO EM 2.62 A A/B/C 1 1217 Spike glycoprotein Angiotensin-converting enzyme - -
20 pdb_00008wlr 8WLR EM 3.12 A B 1 1217 Spike glycoprotein Angiotensin-converting enzyme - -
21 pdb_00008wro 8WRO EM 3.90 A A/B/C 1 1216 Spike glycoprotein, Spike glycoprotein, Spike glycoprotein, Fusion protein Processed angiotensin-converting enzyme 2 - -
22 pdb_00008wtj 8WTJ EM 4.64 A A/B/C 1 1216 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
23 pdb_00007a94 7A94 EM 3.90 A A/B/C 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
24 pdb_00007a95 7A95 EM 4.30 A A/B/C 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
25 pdb_00007a96 7A96 EM 4.80 A A/B/C 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
26 pdb_00007a97 7A97 EM 4.40 A A/B/C 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
27 pdb_00007a98 7A98 EM 5.40 A A/B/C 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
28 pdb_00007df4 7DF4 EM 3.80 A B/C/D 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
29 pdb_00007kms 7KMS EM 3.64 A A/B/C 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
30 pdb_00007kmz 7KMZ EM 3.62 A A/B/C 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
31 pdb_00007knb 7KNB EM 3.93 A A/B/C 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
32 pdb_00007kne 7KNE EM 3.85 A A/B/C 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
33 pdb_00007knh 7KNH EM 3.74 A A/B/C 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
34 pdb_00007kni 7KNI EM 3.91 A A/B/C 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
35 pdb_00007mjm 7MJM EM 2.83 A A/B/C 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
36 pdb_00007mjn 7MJN EM 3.29 A B 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
37 pdb_00007r0z 7R0Z EM 3.50 A A 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
38 pdb_00007r10 7R10 EM 4.00 A A 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
39 pdb_00007r11 7R11 EM 3.50 A A 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
40 pdb_00007r12 7R12 EM 3.30 A A 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
41 pdb_00007r1a 7R1A EM 3.90 A A/B/C 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
42 pdb_00007sxx 7SXX EM 2.66 A A/B/C 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
43 pdb_00007sxy 7SXY EM 2.79 A B 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
44 pdb_00007sxz 7SXZ EM 2.61 A A/B/C 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
45 pdb_00007sy0 7SY0 EM 3.00 A B 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
46 pdb_00007sy1 7SY1 EM 2.83 A A/B/C 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
47 pdb_00007sy2 7SY2 EM 3.11 A B 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
48 pdb_00007sy3 7SY3 EM 2.95 A A/B/C 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
49 pdb_00007sy4 7SY4 EM 3.35 A B 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
50 pdb_00007sy5 7SY5 EM 2.59 A A/B/C 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
51 pdb_00007sy6 7SY6 EM 2.81 A B 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
52 pdb_00007sy7 7SY7 EM 2.81 A A/B/C 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
53 pdb_00007sy8 7SY8 EM 3.14 A B 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
54 pdb_00007t9k 7T9K EM 2.45 A A/B/C 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
55 pdb_00007t9l 7T9L EM 2.66 A A 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
56 pdb_00007tez 7TEZ EM 3.27 A B 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
57 pdb_00007tf0 7TF0 EM 3.02 A A/B/C 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
58 pdb_00007v7z 7V7Z EM 3.10 A A/B/C 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2, Green fluorescent protein - -
59 pdb_00007v80 7V80 EM 3.90 A A 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2, Green fluorescent protein - -
60 pdb_00007v81 7V81 EM 3.20 A A/B/C 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2, Green fluorescent protein - -
61 pdb_00007v82 7V82 EM 2.80 A A/B/C 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2, Green fluorescent protein - -
62 pdb_00007v83 7V83 EM 2.80 A A/B/C 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2, Green fluorescent protein - -
63 pdb_00007v84 7V84 EM 3.00 A A 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2, Green fluorescent protein - -
64 pdb_00007v85 7V85 EM 3.30 A A/B/C 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2, Green fluorescent protein - -
65 pdb_00007v86 7V86 EM 2.80 A A/B/C 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2, Green fluorescent protein - -
66 pdb_00007v87 7V87 EM 3.30 A A 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2, Angiotensin-converting enzyme 2 (ACE2) ectodomain - -
67 pdb_00007v88 7V88 EM 3.30 A A/B/C 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2, Angiotensin-converting enzyme 2 (ACE2) ectodomain - -
68 pdb_00007v89 7V89 EM 2.80 A A/B/C 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2, Angiotensin-converting enzyme 2 (ACE2) ectodomain - -
69 pdb_00007v8a 7V8A EM 2.70 A A/B/C 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2, Angiotensin-converting enzyme 2 (ACE2) ectodomain - -
70 pdb_00007v8b 7V8B EM 3.20 A A 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2, Angiotensin-converting enzyme 2 (ACE2) ectodomain - -
71 pdb_00007vx5 7VX5 EM 3.80 A E 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
72 pdb_00007vxa 7VXA EM 3.90 A A/B/D 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
73 pdb_00007vxb 7VXB EM 3.90 A A/B/D 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
74 pdb_00007vxc 7VXC EM 3.90 A A/B/D 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
75 pdb_00007wvp 7WVP EM 3.70 A B/C/D 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
76 pdb_00007wvq 7WVQ EM 4.04 A B/C/D 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
77 pdb_00007y1y 7Y1Y EM 3.30 A A/B/C 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
78 pdb_00007y1z 7Y1Z EM 3.40 A A/B/C 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
79 pdb_00007y20 7Y20 EM 3.80 A A/B/C 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
80 pdb_00007y21 7Y21 EM 2.80 A A/B/C 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
81 pdb_00007yeg 7YEG EM 3.73 A A/B/C 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 Heavy chain of R1-32 Fab Light chain of R1-32 Fab
82 pdb_00008aqs 8AQS EM 2.92 A 1 1208 Spike glycoprotein,Fibritin Processed angiotensin-converting enzyme 2 - -
83 pdb_00008aqt 8AQT EM 4.40 A B 1 1208 Spike glycoprotein, Fibritin Processed angiotensin-converting enzyme 2, Ig gamma-2A chain C region, membrane-bound form - -
84 pdb_00008aqu 8AQU EM 3.22 A B 1 1208 Spike glycoprotein, Fibritin Processed angiotensin-converting enzyme 2, Ig gamma-2A chain C region, membrane-bound form - -
85 pdb_00008aqv 8AQV EM 2.96 A B 1 1208 Spike glycoprotein, Fibritin Processed angiotensin-converting enzyme 2, Ig gamma-2A chain C region, membrane-bound form - -
86 pdb_00008aqw 8AQW EM 3.30 A B 1 1208 Spike glycoprotein, Fibritin Processed angiotensin-converting enzyme 2, Ig gamma-2A chain C region, A allele - -
87 pdb_00008dlj 8DLJ EM 2.91 A A/B/C 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
88 pdb_00008dlk 8DLK EM 3.04 A B 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
89 pdb_00008dlm 8DLM EM 2.89 A A/B/C 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
90 pdb_00008dln 8DLN EM 3.04 A B 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
91 pdb_00008dlp 8DLP EM 2.64 A A/B/C 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
92 pdb_00008dlq 8DLQ EM 2.77 A B 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
93 pdb_00008dlu 8DLU EM 3.14 A A/B/C 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
94 pdb_00008dlv 8DLV EM 3.11 A B 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
95 pdb_00008dm5 8DM5 EM 2.51 A A/B/C 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
96 pdb_00008dm6 8DM6 EM 2.77 A A 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
97 pdb_00008dm7 8DM7 EM 2.49 A A/B/C 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
98 pdb_00008dm8 8DM8 EM 2.68 A A 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
99 pdb_00008dm9 8DM9 EM 2.56 A A/B/C 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
100 pdb_00008dma 8DMA EM 2.79 A A 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
101 pdb_00008dv1 8DV1 EM 3.40 A A 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2, Immunoglobulin gamma-1 heavy chain fusion, Immunoglobulin gamma-1 heavy chain - -
102 pdb_00008dv2 8DV2 EM 3.50 A A 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2, Immunoglobulin gamma-1 heavy chain fusion - -
103 pdb_00008i9c 8I9C EM 3.85 A A/B/C 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
104 pdb_00008i9d 8I9D EM 3.95 A A/B/C 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
105 pdb_00008t20 8T20 EM 3.36 A A/B/C 1 1208 Spike glycoprotein Angiotensin-converting enzyme - -
106 pdb_00008t22 8T22 EM 3.83 A A/B/C 1 1208 Spike glycoprotein Angiotensin-converting enzyme - -
107 pdb_00008taz 8TAZ EM 3.75 A A/B/C 1 1208 Spike glycoprotein Angiotensin-converting enzyme - -
108 pdb_00008wgv 8WGV EM 2.92 A A/B/C 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
109 pdb_00008wgw 8WGW EM 2.90 A A 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
110 pdb_00008y16 8Y16 EM 2.98 A B/C/D 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
111 pdb_00008y18 8Y18 EM 3.04 A B 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
112 pdb_00008vkl 8VKL EM 2.91 A A/B/C 1 1207 Spike glycoprotein Angiotensin-converting enzyme 2 - -
113 pdb_00008vkm 8VKM EM 2.83 A A/B/C 1 1207 Spike glycoprotein Angiotensin-converting enzyme 2 - -
114 pdb_00008vko 8VKO EM 2.68 A A/B/C 1 1207 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
115 pdb_00007tew 7TEW EM 3.52 A B 1 1206 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
116 pdb_00007tex 7TEX EM 3.27 A A/B/C 1 1206 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
117 pdb_00007vx4 7VX4 EM 3.90 A E 1 1206 Spike glycoprotein Angiotensin-converting enzyme 2 - -
118 pdb_00007vxd 7VXD EM 4.00 A A/B/D 1 1206 Spike glycoprotein Angiotensin-converting enzyme 2 - -
119 pdb_00007vxf 7VXF EM 3.60 A A/B/D 1 1206 Spike glycoprotein Angiotensin-converting enzyme 2 - -
120 pdb_00007vxk 7VXK EM 3.70 A A/B/D 1 1206 Spike glycoprotein Angiotensin-converting enzyme 2 - -
121 pdb_00007vxm 7VXM EM 3.60 A A/B/D 1 1206 Spike glycoprotein Angiotensin-converting enzyme 2 - -
122 pdb_00007w98 7W98 EM 3.60 A A/B/C 1 1206 Spike glycoprotein Angiotensin-converting enzyme 2 - -
123 pdb_00007w99 7W99 EM 3.40 A A/C/D 1 1206 Spike glycoprotein Angiotensin-converting enzyme 2 - -
124 pdb_00007w9b 7W9B EM 3.40 A B/C/D 1 1206 Spike glycoprotein Angiotensin-converting enzyme 2 - -
125 pdb_00007w9c 7W9C EM 3.20 A B/C/D 1 1206 Spike glycoprotein Angiotensin-converting enzyme 2 - -
126 pdb_00008i9b 8I9B EM 3.50 A A/B/C 1 1206 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
127 pdb_00008iou 8IOU EM 3.18 A A/B/C 12 1210 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
128 pdb_00008iov 8IOV EM 3.29 A B 12 1210 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
129 pdb_00008xlm 8XLM EM 3.22 A A/B/C 12 1210 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
130 pdb_00008xln 8XLN EM 3.78 A A 12 1210 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
131 pdb_00008jje 8JJE EM 3.40 A B 14 1211 Spike glycoprotein Angiotensin-converting enzyme 2 - -
132 pdb_00007kj2 7KJ2 EM 3.60 A A/B/C 14 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
133 pdb_00007kj3 7KJ3 EM 3.70 A A/B/C 14 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
134 pdb_00007kj4 7KJ4 EM 3.40 A A/B/C 14 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
135 pdb_00007fem 7FEM EM 4.10 A A/B/C 15 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
136 pdb_00007edj 7EDJ EM 3.30 A A/B/C 16 1208 Spike glycoprotein Angiotensin-converting enzyme 2 (ACE2) ectodomain - -
137 pdb_00007kmb 7KMB EM 3.39 A G 16 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
138 pdb_00008xn5 8XN5 EM 2.87 A B/C/D 16 1207 Spike glycoprotein Angiotensin-converting enzyme 2 - -
139 pdb_00008jyn 8JYN EM 3.04 A A/B/C 28 1210 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
140 pdb_00008jyo 8JYO EM 3.20 A A/B/C 28 1210 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
141 pdb_00008jyp 8JYP EM 3.38 A A 28 1210 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
142 pdb_00008whs 8WHS EM 3.33 A A/B/C 28 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
143 pdb_00008whu 8WHU EM 3.30 A A/B/C 28 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
144 pdb_00008xnk 8XNK EM 2.78 A B/C/D 28 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -