SARS-CoV-2 Ligands Database

FULL ACE

A full-length spike protein is the entire, functional protein that protrudes from the viral surface. It includes all its key domains and components:

S1 subunit: Contains the N-Terminal Domain (NTD) and the Receptor-Binding Domain (RBD), which are responsible for attaching to the host cell (e.g., via the ACE2 receptor).

S2 subunit: Contains the fusion machinery, including the fusion peptide, Heptad Repeat 1 (HR1), Heptad Repeat 2 (HR2), and the Transmembrane Domain (TM). This subunit is responsible for fusing the viral and host cell membranes.

For details, please see each domain's page.

№ Extended PDB ID PDB ID Method Resolution Chain Start End Macromolecules Ligand 1 Ligand 2 Ligand 3
1 pdb_00007ct5 7CT5 EM 4.00 A/B/C 1 1273 Spike glycoprotein Angiotensin-converting enzyme 2 - -
2 pdb_00007dwx 7DWX EM 8.30 E/F/G/H/I/J 1 1273 Spike glycoprotein Sodium-dependent neutral amino acid transporter B(0)AT1 Angiotensin-converting enzyme 2 -
3 pdb_00007dx5 7DX5 EM 3.50 A A/B/C 1 1273 Spike glycoprotein Angiotensin-converting enzyme 2 - -
4 pdb_00007dx6 7DX6 EM 3.00 A A/B/C 1 1273 Spike glycoprotein Angiotensin-converting enzyme 2 - -
5 pdb_00007dx7 7DX7 EM 3.40 A A/B/C 1 1273 Spike glycoprotein Angiotensin-converting enzyme 2 - -
6 pdb_00007dx8 7DX8 EM 2.90 A A/B/C 1 1273 Spike glycoprotein Angiotensin-converting enzyme 2 - -
7 pdb_00007dx9 7DX9 EM 3.60 A A/B/C 1 1273 Spike glycoprotein Angiotensin-converting enzyme 2 - -
8 pdb_00007wgb 7WGB EM 3.50 A A/B/C 1 1273 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
9 pdb_00007wgc 7WGC EM 3.60 A C 1 1273 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
10 pdb_00007xo7 7XO7 EM 3.48 A A/B/C 1 1273 Spike glycoprotein Angiotensin-converting enzyme 2 - -
11 pdb_00007xo8 7XO8 EM 3.48 A A/B/C 1 1273 Spike glycoprotein Angiotensin-converting enzyme 2 - -
12 pdb_00007xo9 7XO9 EM 3.00 A A 1 1273 Spike glycoprotein Angiotensin-converting enzyme 2 - -
13 pdb_00007xoa 7XOA EM 3.20 A A/B/C 1 1273 Spike glycoprotein Angiotensin-converting enzyme 2 - -
14 pdb_00007xob 7XOB EM 3.30 A A/B/C 1 1273 Spike glycoprotein Angiotensin-converting enzyme 2 - -
15 pdb_00007xoc 7XOC EM 3.00 A A 1 1273 Spike glycoprotein Angiotensin-converting enzyme 2 - -
16 pdb_00007yr2 7YR2 EM 3.30 A C/D/E 1 1273 Spike glycoprotein Angiotensin-converting enzyme 2 - -
17 pdb_00007yr3 7YR3 EM 3.52 A B/C/F 1 1273 Spike glycoprotein Angiotensin-converting enzyme 2 - -
18 pdb_00008hfz 8HFZ EM 2.71 A A/B/C 1 1217 Spike glycoprotein Angiotensin-converting enzyme - -
19 pdb_00008wlo 8WLO EM 2.62 A A/B/C 1 1217 Spike glycoprotein Angiotensin-converting enzyme - -
20 pdb_00008wlr 8WLR EM 3.12 A B 1 1217 Spike glycoprotein Angiotensin-converting enzyme - -
21 pdb_00008wro 8WRO EM 3.90 A A/B/C 1 1216 Spike glycoprotein, Spike glycoprotein, Spike glycoprotein, Fusion protein Processed angiotensin-converting enzyme 2 - -
22 pdb_00008wtj 8WTJ EM 4.64 A A/B/C 1 1216 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
23 pdb_00007a94 7A94 EM 3.90 A A/B/C 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
24 pdb_00007a95 7A95 EM 4.30 A A/B/C 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
25 pdb_00007a96 7A96 EM 4.80 A A/B/C 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
26 pdb_00007a97 7A97 EM 4.40 A A/B/C 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
27 pdb_00007a98 7A98 EM 5.40 A A/B/C 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
28 pdb_00007df4 7DF4 EM 3.80 A B/C/D 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
29 pdb_00007kms 7KMS EM 3.64 A A/B/C 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
30 pdb_00007kmz 7KMZ EM 3.62 A A/B/C 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
31 pdb_00007knb 7KNB EM 3.93 A A/B/C 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
32 pdb_00007kne 7KNE EM 3.85 A A/B/C 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
33 pdb_00007knh 7KNH EM 3.74 A A/B/C 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
34 pdb_00007kni 7KNI EM 3.91 A A/B/C 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
35 pdb_00007mjm 7MJM EM 2.83 A A/B/C 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
36 pdb_00007mjn 7MJN EM 3.29 A B 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
37 pdb_00007r0z 7R0Z EM 3.50 A A 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
38 pdb_00007r10 7R10 EM 4.00 A A 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
39 pdb_00007r11 7R11 EM 3.50 A A 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
40 pdb_00007r12 7R12 EM 3.30 A A 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
41 pdb_00007r1a 7R1A EM 3.90 A A/B/C 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
42 pdb_00007sxx 7SXX EM 2.66 A A/B/C 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
43 pdb_00007sxy 7SXY EM 2.79 A B 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
44 pdb_00007sxz 7SXZ EM 2.61 A A/B/C 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
45 pdb_00007sy0 7SY0 EM 3.00 A B 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
46 pdb_00007sy1 7SY1 EM 2.83 A A/B/C 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
47 pdb_00007sy2 7SY2 EM 3.11 A B 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
48 pdb_00007sy3 7SY3 EM 2.95 A A/B/C 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
49 pdb_00007sy4 7SY4 EM 3.35 A B 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
50 pdb_00007sy5 7SY5 EM 2.59 A A/B/C 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
51 pdb_00007sy6 7SY6 EM 2.81 A B 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
52 pdb_00007sy7 7SY7 EM 2.81 A A/B/C 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
53 pdb_00007sy8 7SY8 EM 3.14 A B 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
54 pdb_00007t9k 7T9K EM 2.45 A A/B/C 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
55 pdb_00007t9l 7T9L EM 2.66 A A 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
56 pdb_00007tez 7TEZ EM 3.27 A B 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
57 pdb_00007tf0 7TF0 EM 3.02 A A/B/C 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
58 pdb_00007v7z 7V7Z EM 3.10 A A/B/C 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2, Green fluorescent protein - -
59 pdb_00007v80 7V80 EM 3.90 A A 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2, Green fluorescent protein - -
60 pdb_00007v81 7V81 EM 3.20 A A/B/C 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2, Green fluorescent protein - -
61 pdb_00007v82 7V82 EM 2.80 A A/B/C 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2, Green fluorescent protein - -
62 pdb_00007v83 7V83 EM 2.80 A A/B/C 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2, Green fluorescent protein - -
63 pdb_00007v84 7V84 EM 3.00 A A 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2, Green fluorescent protein - -
64 pdb_00007v85 7V85 EM 3.30 A A/B/C 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2, Green fluorescent protein - -
65 pdb_00007v86 7V86 EM 2.80 A A/B/C 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2, Green fluorescent protein - -
66 pdb_00007v87 7V87 EM 3.30 A A 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2, Angiotensin-converting enzyme 2 (ACE2) ectodomain - -
67 pdb_00007v88 7V88 EM 3.30 A A/B/C 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2, Angiotensin-converting enzyme 2 (ACE2) ectodomain - -
68 pdb_00007v89 7V89 EM 2.80 A A/B/C 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2, Angiotensin-converting enzyme 2 (ACE2) ectodomain - -
69 pdb_00007v8a 7V8A EM 2.70 A A/B/C 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2, Angiotensin-converting enzyme 2 (ACE2) ectodomain - -
70 pdb_00007v8b 7V8B EM 3.20 A A 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2, Angiotensin-converting enzyme 2 (ACE2) ectodomain - -
71 pdb_00007vx5 7VX5 EM 3.80 A E 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
72 pdb_00007vxa 7VXA EM 3.90 A A/B/D 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
73 pdb_00007vxb 7VXB EM 3.90 A A/B/D 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
74 pdb_00007vxc 7VXC EM 3.90 A A/B/D 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
75 pdb_00007wvp 7WVP EM 3.70 A B/C/D 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
76 pdb_00007wvq 7WVQ EM 4.04 A B/C/D 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
77 pdb_00007y1y 7Y1Y EM 3.30 A A/B/C 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
78 pdb_00007y1z 7Y1Z EM 3.40 A A/B/C 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
79 pdb_00007y20 7Y20 EM 3.80 A A/B/C 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
80 pdb_00007y21 7Y21 EM 2.80 A A/B/C 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
81 pdb_00007yeg 7YEG EM 3.73 A A/B/C 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 Heavy chain of R1-32 Fab Light chain of R1-32 Fab
82 pdb_00008aqs 8AQS EM 2.92 A 1 1208 Spike glycoprotein,Fibritin Processed angiotensin-converting enzyme 2 - -
83 pdb_00008aqt 8AQT EM 4.40 A B 1 1208 Spike glycoprotein, Fibritin Processed angiotensin-converting enzyme 2, Ig gamma-2A chain C region, membrane-bound form - -
84 pdb_00008aqu 8AQU EM 3.22 A B 1 1208 Spike glycoprotein, Fibritin Processed angiotensin-converting enzyme 2, Ig gamma-2A chain C region, membrane-bound form - -
85 pdb_00008aqv 8AQV EM 2.96 A B 1 1208 Spike glycoprotein, Fibritin Processed angiotensin-converting enzyme 2, Ig gamma-2A chain C region, membrane-bound form - -
86 pdb_00008aqw 8AQW EM 3.30 A B 1 1208 Spike glycoprotein, Fibritin Processed angiotensin-converting enzyme 2, Ig gamma-2A chain C region, A allele - -
87 pdb_00008dlj 8DLJ EM 2.91 A A/B/C 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
88 pdb_00008dlk 8DLK EM 3.04 A B 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
89 pdb_00008dlm 8DLM EM 2.89 A A/B/C 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
90 pdb_00008dln 8DLN EM 3.04 A B 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
91 pdb_00008dlp 8DLP EM 2.64 A A/B/C 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
92 pdb_00008dlq 8DLQ EM 2.77 A B 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
93 pdb_00008dlu 8DLU EM 3.14 A A/B/C 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
94 pdb_00008dlv 8DLV EM 3.11 A B 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
95 pdb_00008dm5 8DM5 EM 2.51 A A/B/C 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
96 pdb_00008dm6 8DM6 EM 2.77 A A 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
97 pdb_00008dm7 8DM7 EM 2.49 A A/B/C 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
98 pdb_00008dm8 8DM8 EM 2.68 A A 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
99 pdb_00008dm9 8DM9 EM 2.56 A A/B/C 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
100 pdb_00008dma 8DMA EM 2.79 A A 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
101 pdb_00008dv1 8DV1 EM 3.40 A A 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2, Immunoglobulin gamma-1 heavy chain fusion, Immunoglobulin gamma-1 heavy chain - -
102 pdb_00008dv2 8DV2 EM 3.50 A A 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2, Immunoglobulin gamma-1 heavy chain fusion - -
103 pdb_00008i9c 8I9C EM 3.85 A A/B/C 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
104 pdb_00008i9d 8I9D EM 3.95 A A/B/C 1 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
105 pdb_00008t20 8T20 EM 3.36 A A/B/C 1 1208 Spike glycoprotein Angiotensin-converting enzyme - -
106 pdb_00008t22 8T22 EM 3.83 A A/B/C 1 1208 Spike glycoprotein Angiotensin-converting enzyme - -
107 pdb_00008taz 8TAZ EM 3.75 A A/B/C 1 1208 Spike glycoprotein Angiotensin-converting enzyme - -
108 pdb_00008wgv 8WGV EM 2.92 A A/B/C 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
109 pdb_00008wgw 8WGW EM 2.90 A A 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
110 pdb_00008y16 8Y16 EM 2.98 A B/C/D 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
111 pdb_00008y18 8Y18 EM 3.04 A B 1 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
112 pdb_00008vkl 8VKL EM 2.91 A A/B/C 1 1207 Spike glycoprotein Angiotensin-converting enzyme 2 - -
113 pdb_00008vkm 8VKM EM 2.83 A A/B/C 1 1207 Spike glycoprotein Angiotensin-converting enzyme 2 - -
114 pdb_00008vko 8VKO EM 2.68 A A/B/C 1 1207 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
115 pdb_00007tew 7TEW EM 3.52 A B 1 1206 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
116 pdb_00007tex 7TEX EM 3.27 A A/B/C 1 1206 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
117 pdb_00007vx4 7VX4 EM 3.90 A E 1 1206 Spike glycoprotein Angiotensin-converting enzyme 2 - -
118 pdb_00007vxd 7VXD EM 4.00 A A/B/D 1 1206 Spike glycoprotein Angiotensin-converting enzyme 2 - -
119 pdb_00007vxf 7VXF EM 3.60 A A/B/D 1 1206 Spike glycoprotein Angiotensin-converting enzyme 2 - -
120 pdb_00007vxk 7VXK EM 3.70 A A/B/D 1 1206 Spike glycoprotein Angiotensin-converting enzyme 2 - -
121 pdb_00007vxm 7VXM EM 3.60 A A/B/D 1 1206 Spike glycoprotein Angiotensin-converting enzyme 2 - -
122 pdb_00007w98 7W98 EM 3.60 A A/B/C 1 1206 Spike glycoprotein Angiotensin-converting enzyme 2 - -
123 pdb_00007w99 7W99 EM 3.40 A A/C/D 1 1206 Spike glycoprotein Angiotensin-converting enzyme 2 - -
124 pdb_00007w9b 7W9B EM 3.40 A B/C/D 1 1206 Spike glycoprotein Angiotensin-converting enzyme 2 - -
125 pdb_00007w9c 7W9C EM 3.20 A B/C/D 1 1206 Spike glycoprotein Angiotensin-converting enzyme 2 - -
126 pdb_00008i9b 8I9B EM 3.50 A A/B/C 1 1206 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
127 pdb_00008iou 8IOU EM 3.18 A A/B/C 12 1210 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
128 pdb_00008iov 8IOV EM 3.29 A B 12 1210 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
129 pdb_00008xlm 8XLM EM 3.22 A A/B/C 12 1210 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
130 pdb_00008xln 8XLN EM 3.78 A A 12 1210 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
131 pdb_00008jje 8JJE EM 3.40 A B 14 1211 Spike glycoprotein Angiotensin-converting enzyme 2 - -
132 pdb_00007kj2 7KJ2 EM 3.60 A A/B/C 14 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
133 pdb_00007kj3 7KJ3 EM 3.70 A A/B/C 14 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
134 pdb_00007kj4 7KJ4 EM 3.40 A A/B/C 14 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
135 pdb_00007fem 7FEM EM 4.10 A A/B/C 15 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
136 pdb_00007edj 7EDJ EM 3.30 A A/B/C 16 1208 Spike glycoprotein Angiotensin-converting enzyme 2 (ACE2) ectodomain - -
137 pdb_00007kmb 7KMB EM 3.39 A G 16 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -
138 pdb_00008xn5 8XN5 EM 2.87 A B/C/D 16 1207 Spike glycoprotein Angiotensin-converting enzyme 2 - -
139 pdb_00008jyn 8JYN EM 3.04 A A/B/C 28 1210 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
140 pdb_00008jyo 8JYO EM 3.20 A A/B/C 28 1210 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
141 pdb_00008jyp 8JYP EM 3.38 A A 28 1210 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
142 pdb_00008whs 8WHS EM 3.33 A A/B/C 28 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
143 pdb_00008whu 8WHU EM 3.30 A A/B/C 28 1208 Spike glycoprotein Processed angiotensin-converting enzyme 2 - -
144 pdb_00008xnk 8XNK EM 2.78 A B/C/D 28 1208 Spike glycoprotein Angiotensin-converting enzyme 2 - -