| 1 |
pdb_00007jjc
|
7JJC
|
X-ray |
2.36 A |
E/F/G/H |
678 |
685 |
Spike protein S1 |
Neuropilin-1 |
| 2 |
pdb_00007yue
|
7YUE
|
X-ray |
2.35 A |
C |
813 |
826 |
Spike protein S2 |
Single chain variable Fragment |
| 3 |
pdb_00007zr2
|
7ZR2
|
X-ray |
1.45 A |
A |
757 |
988 |
Spike protein S2', Chimeric protein mimic of SARS-CoV-2 Spike HR1 |
Spike protein S2' |
| 4 |
pdb_00007t3m
|
7T3M
|
EM |
3.00 A |
A/C/G |
1 |
1149 |
Spike glycoprotein |
Antibody 2-7 scFv |
| 5 |
pdb_00007a25
|
7A25
|
EM |
3.06 A |
A/B/C |
1 |
1146 |
Spike glycoprotein |
Sybody 23 |
| 6 |
pdb_00007zss
|
7ZSS
|
EM |
2.63 A |
A/B/C |
1 |
1146 |
Spike glycoprotein |
de novo designed binder |
| 7 |
pdb_00008eyg
|
8EYG
|
EM |
3.73 A |
A/B/C |
14 |
1149 |
Spike glycoprotein |
Nanobody |
| 8 |
pdb_00008eyh
|
8EYH
|
EM |
3.75 A |
A/B/C |
14 |
1149 |
Spike glycoprotein |
Nanobody |
| 9 |
pdb_00008f4p
|
8F4P
|
EM |
3.70 A |
A/B/C |
14 |
1149 |
Spike glycoprotein |
Anti-S1 Nanobody |
| 10 |
pdb_00007xy3
|
7XY3
|
EM |
4.60 A |
A/B/C |
14 |
1145 |
Spike glycoprotein |
VHH14 |
| 11 |
pdb_00007xy4
|
7XY4
|
EM |
3.30 A |
A/B/C |
14 |
1145 |
Spike glycoprotein |
VHH21 |
| 12 |
pdb_00008cyd
|
8CYD
|
EM |
2.60 A |
A/B/C |
15 |
1157 |
Spike glycoprotein |
Pan-sarbecovirus nanobody 2-45 |
| 13 |
pdb_00007n9t
|
7N9T
|
EM |
3.18 A |
A/B/C |
25 |
1147 |
Spike glycoprotein |
Nanobody Nb17 |
| 14 |
pdb_00008c1v
|
8C1V
|
EM |
2.90 A |
A/B/C |
26 |
1149 |
Spike glycoprotein |
Sb92 |
| 15 |
pdb_00008w4f
|
8W4F
|
EM |
4.20 A |
A/B/C |
27 |
1146 |
Spike glycoprotein |
Tribody |
| 16 |
pdb_00007ek6
|
7EK6
|
X-ray |
1.24 A |
A |
906 |
957 |
Spike protein S2 |
Spike protein S2 |
| 17 |
pdb_00006x45
|
6X45
|
X-ray |
2.20 A |
A/B/C |
912 |
966 |
Spike protein S2' |
Spike protein S2' |
| 18 |
pdb_00007rzq
|
7RZQ
|
EM |
2.09 A |
A/B/C |
917 |
988 |
SARS-CoV-2 HR1 linked to a scaffold, Spike protein S2' |
Spike protein S2' |
| 19 |
pdb_00007rzr
|
7RZR
|
EM |
2.27 A |
A/B/C |
917 |
988 |
SARS-CoV-2 HR1 D936Y linked to a scaffold, Spike protein S2' |
Spike protein S2' |
| 20 |
pdb_00007rzs
|
7RZS
|
EM |
2.52 A |
A/B/C |
917 |
988 |
SARS-CoV-2 HR1 L938F linked to a scaffold, Spike protein S2' |
Spike protein S2' |
| 21 |
pdb_00007rzt
|
7RZT
|
EM |
2.35 A |
A/B/C |
917 |
988 |
SARS-CoV-2 HR1 S940F linked to a scaffold, Spike protein S2' |
Spike protein S2' |
| 22 |
pdb_00007rzu
|
7RZU
|
EM |
2.30 A |
A/B/C |
917 |
988 |
SARS-CoV-2 HR1 A942S linked to a scaffold, Spike protein S2' |
Spike protein S2' |
| 23 |
pdb_00007rzv
|
7RZV
|
EM |
2.11 A |
A/B/C |
917 |
988 |
SARS-CoV-2 HR1 linked to a scaffold, Spike protein S2' |
Spike protein S2' |
| 24 |
pdb_00007tik
|
7TIK
|
EM |
2.40 A |
A/B/C |
917 |
988 |
Ferritin, Dps family protein and Spike protein S2' chimera |
Spike protein S2' |
| 25 |
pdb_00008czi
|
8CZI
|
EM |
2.22 A |
A/B/C |
917 |
988 |
Scaffolded Spike protein S2' HR1 |
Spike protein S2' HR2 |
| 26 |
pdb_00008fa2
|
8FA2
|
EM |
2.82 A |
A/B/C |
917 |
988 |
Scaffolded Spike protein S2' HR1 |
Spike protein S2' 42G |
| 27 |
pdb_00007rzv
|
7RZV
|
EM |
2.11 A |
D/E/F |
1157 |
1201 |
SARS-CoV-2 HR1 linked to a scaffold, Spike protein S2' |
Spike protein S2' |
| 28 |
pdb_00007tik
|
7TIK
|
EM |
2.40 A |
D/E/F |
1157 |
1201 |
Ferritin, Dps family protein and Spike protein S2' chimera |
Spike protein S2' |
| 29 |
pdb_00008czi
|
8CZI
|
EM |
2.22 A |
D/E/F |
1157 |
1201 |
Scaffolded Spike protein S2' HR1 |
Spike protein S2' HR2 |
| 30 |
pdb_00008fa1
|
8FA1
|
EM |
2.51 A |
D/E/F |
1157 |
1201 |
Ferritin, Dps family protein and Spike protein S2' chimera |
Spike protein S2' HR2 |
| 31 |
pdb_00008fa2
|
8FA2
|
EM |
2.82 A |
D/E/F |
1157 |
1201 |
Scaffolded Spike protein S2' HR1 |
Spike protein S2' 42G |
| 32 |
pdb_00007rzq
|
7RZQ
|
EM |
2.09 A |
D/E/F |
1162 |
1201 |
SARS-CoV-2 HR1 linked to a scaffold, Spike protein S2' |
Spike protein S2' |
| 33 |
pdb_00007rzr
|
7RZR
|
EM |
2.27 A |
D/E/F |
1162 |
1201 |
SARS-CoV-2 HR1 D936Y linked to a scaffold, Spike protein S2' |
Spike protein S2' |
| 34 |
pdb_00007rzs
|
7RZS
|
EM |
2.52 A |
D/E/F |
1162 |
1201 |
SARS-CoV-2 HR1 L938F linked to a scaffold, Spike protein S2' |
Spike protein S2' |
| 35 |
pdb_00007rzt
|
7RZT
|
EM |
2.35 A |
D/E/F |
1162 |
1201 |
SARS-CoV-2 HR1 S940F linked to a scaffold,Spike protein S2' |
Spike protein S2' |
| 36 |
pdb_00007rzu
|
7RZU
|
EM |
2.30 A |
D/E/F |
1162 |
1201 |
SARS-CoV-2 HR1 A942S linked to a scaffold,Spike protein S2' |
Spike protein S2' |
| 37 |
pdb_00007zr2
|
7ZR2
|
X-ray |
1.45 A |
B |
1163 |
1206 |
Spike protein S2', Chimeric protein mimic of SARS-CoV-2 Spike HR1 |
Spike protein S2' |
| 38 |
pdb_00006x45
|
6X45
|
X-ray |
2.20 A |
D/E/F |
1168 |
1203 |
Spike protein S2' |
Spike protein S2' |
| 39 |
pdb_00007ek6
|
7EK6
|
X-ray |
1.24 A |
B |
1175 |
1211 |
Spike protein S2 |
Spike protein S2 |
| 40 |
pdb_00008ens
|
8ENS
|
X-ray |
1.45 A |
C |
1267 |
1273 |
Spike tail hepta-peptide |
Coatomer subunit beta' |
| 41 |
pdb_00008enw
|
8ENW
|
X-ray |
1.45 A |
C/D |
1267 |
1272 |
Clientized spike tail peptide |
Coatomer subunit beta' |
| 42 |
pdb_00008enx
|
8ENX
|
X-ray |
1.80 A |
C |
1267 |
1272 |
Clientized spike tail heptapeptide |
Coatomer subunit beta' |
| 43 |
pdb_00008hqt
|
8HQT
|
X-ray |
1.80 A |
B |
1268 |
1273 |
SARS-CoV-2 Spike KxHxx motif |
Coatomer subunit beta' |
| 44 |
pdb_00007xrp
|
7XRP
|
EM |
3.88 A |
A |
27 |
309 |
Spike protein S1 |
C5G2 nanobody |
| 45 |
pdb_00007fh0
|
7FH0
|
X-ray |
3.20 |
A |
309 |
537 |
Spike protein S1, Spike protein S1 |
Nanobodies aRBD-2-7 |
| 46 |
pdb_00007nll
|
7NLL
|
EM |
2.89 A |
B/D |
319 |
550 |
Spike protein S1 |
Nanobody Fu2 |
| 47 |
pdb_00007jvb
|
7JVB
|
X-ray |
3.29 A |
A/B |
319 |
541 |
Spike protein S1 |
Nanobody Nb20 |
| 48 |
pdb_00007l4z
|
7L4Z
|
X-ray |
3.96 |
A/B/C/D |
319 |
541 |
Spike protein S1 |
ACE-DTY-LYS-ALA-GLY-VAL-VAL-TYR-GLY-TYR-ASN-ALA-TRP-ILE-ARG-CYS-NH2 |
| 49 |
pdb_00007nkt
|
7NKT
|
X-ray |
2.30 |
AAA |
319 |
541 |
Spike protein S1 |
Neutralizing nanobody NM1226 |
| 50 |
pdb_00008sk5
|
8SK5
|
X-ray |
2.01 A |
A |
319 |
541 |
Spike protein S1 |
Anti-SARS-CoV-2 receptor binding domain VHH |
| 51 |
pdb_00008zer
|
8ZER
|
X-ray |
3.10 A |
B/C/E/G/I |
319 |
541 |
Spike protein S1 |
Nanobody P2C5 |
| 52 |
pdb_00007km5
|
7KM5
|
X-ray |
3.19 A |
A/B |
319 |
535 |
Spike protein S1 |
Nanobody |
| 53 |
pdb_00007spp
|
7SPP
|
X-ray |
1.96 A |
A |
319 |
535 |
Spike protein S1 |
VNAR 2C02 |
| 54 |
pdb_00007vnb
|
7VNB
|
X-ray |
2.27 A |
B |
319 |
531 |
Spike protein S1 |
n3113 |
| 55 |
pdb_00008k3k
|
8K3K
|
X-ray |
2.43 A |
E |
319 |
531 |
Spike protein S1 |
Nanobody Nb4 |
| 56 |
pdb_00008xk2
|
8XK2
|
X-ray |
3.40 A |
A/C/E/G |
319 |
531 |
Spike protein S1 |
VHH60 nanobody |
| 57 |
pdb_00007dhx
|
7DHX
|
X-ray |
2.30 A |
B |
319 |
527 |
Spike glycoprotein |
Pangolin ACE2 |
| 58 |
pdb_00008y0y
|
8Y0Y
|
EM |
2.86 A |
A |
319 |
527 |
Spike glycoprotein |
123-316 scDb |
| 59 |
pdb_00007w1s
|
7W1S
|
X-ray |
2.00 A |
A |
320 |
537 |
Spike protein S1 |
Nanobody Nb-007 |
| 60 |
pdb_00008h5t
|
8H5T
|
X-ray |
2.00 A |
A |
320 |
537 |
Spike protein S1 |
Nanobody Nb-015 |
| 61 |
pdb_00008h5u
|
8H5U
|
X-ray |
2.40 A |
A/C |
320 |
537 |
Spike protein S1 |
Nanobody Nb-021 |
| 62 |
pdb_00007voa
|
7VOA
|
X-ray |
1.80 A |
B |
321 |
528 |
Spike glycoprotein |
Alpaca nanobody |
| 63 |
pdb_00007rby
|
7RBY
|
X-ray |
2.82 A |
A/C |
329 |
538 |
Spike protein S1 |
Ilama-isolated nanobody NIH-CoV nb-112 specific to SARS-CoV-2 RBD |
| 64 |
pdb_00006yz5
|
6YZ5
|
X-ray |
1.80 A |
E |
330 |
532 |
Spike glycoprotein |
Nanobody H11-D4 |
| 65 |
pdb_00006zbp
|
6ZBP
|
X-ray |
1.85 A |
EEE |
330 |
532 |
Spike glycoprotein |
H11-H4 |
| 66 |
pdb_00007oao
|
7OAO
|
X-ray |
1.50 A |
EEE |
330 |
532 |
Spike protein S1 |
C5 nanobody |
| 67 |
pdb_00007oau
|
7OAU
|
X-ray |
1.65 A |
AAA/EEE |
330 |
532 |
Spike protein S1 |
C5 |
| 68 |
pdb_00007oay
|
7OAY
|
X-ray |
2.34 A |
AAA/CCC/EEE/GGG/III/KKK |
330 |
532 |
Spike protein S1 |
F2 nanobody |
| 69 |
pdb_00007spo
|
7SPO
|
X-ray |
1.92 A |
A/B |
330 |
532 |
Spike protein S1 |
VNAR 3B4 |
| 70 |
pdb_00007z1d
|
7Z1D
|
X-ray |
1.55 A |
EEE |
330 |
532 |
Spike protein S1 |
H11-H6 nanobody |
| 71 |
pdb_00007z1e
|
7Z1E
|
X-ray |
1.59 A |
EEE |
330 |
532 |
Spike protein S1 |
H11-H4 Q98R H100E |
| 72 |
pdb_00007c8v
|
7C8V
|
X-ray |
2.15 A |
B |
330 |
531 |
Spike protein S1 |
Synthetic nanobody SR4 |
| 73 |
pdb_00007c8w
|
7C8W
|
X-ray |
2.77 A |
B |
330 |
531 |
Spike protein S1 |
Synthetic nanobody MR17 |
| 74 |
pdb_00007can
|
7CAN
|
X-ray |
2.94 A |
B |
330 |
531 |
Spike protein S1 |
Sybody MR17-K99Y |
| 75 |
pdb_00007cyv
|
7CYV
|
X-ray |
3.13 A |
B |
330 |
531 |
Spike protein S1 |
The heavy chain variable region of the scFv FD20,The light chain variable region of the scFv FD20 |
| 76 |
pdb_00007d2z
|
7D2Z
|
X-ray |
1.97 A |
B |
330 |
531 |
Spike protein S1 |
SR31 against SARS-CoV-2 RBD, non neutralizing |
| 77 |
pdb_00007d30
|
7D30
|
X-ray |
2.10 A |
B |
330 |
531 |
Spike protein S1 |
Sybody fusion of MR17-SR31 with a GS linker |
| 78 |
pdb_00007f5g
|
7F5G
|
X-ray |
1.75 A |
A/C |
330 |
531 |
Spike glycoprotein |
Nanobody DL4 |
| 79 |
pdb_00007f5h
|
7F5H
|
X-ray |
3.00 A |
A/B |
330 |
531 |
SARS-CoV-2 Spike Receptor-Binding Domain (RBD) |
Nanobody DL28 |
| 80 |
pdb_00007wqv
|
7WQV
|
X-ray |
2.80 A |
A/C/E/G/I/K/M/O |
330 |
531 |
Spike protein S1 |
Ab08 |
| 81 |
pdb_00008oww
|
8OWW
|
X-ray |
1.97 A |
A |
330 |
531 |
Spike protein S2' |
B5-5 nanobody |
| 82 |
pdb_00007q3q
|
7Q3Q
|
X-ray |
2.30 A |
A |
331 |
528 |
Spike glycoprotein |
VHH-12 |
| 83 |
pdb_00007ldj
|
7LDJ
|
X-ray |
2.36 A |
A/B/C/D |
331 |
527 |
Spike glycoprotein |
Nanobody 2 |
| 84 |
pdb_00007fbj
|
7FBJ
|
X-ray |
2.85 A |
A/C/E/G/I/K/M/O |
332 |
527 |
Spike protein S1 |
New antigen receptor variable domain |
| 85 |
pdb_00007fbk
|
7FBK
|
X-ray |
1.90 A |
A/B |
332 |
527 |
Spike protein S1 |
New antigen receptor variable domain |
| 86 |
pdb_00007zsd
|
7ZSD
|
EM |
3.29 A |
M |
332 |
527 |
Spike glycoprotein |
De novo designed binder |
| 87 |
pdb_00008zes
|
8ZES
|
X-ray |
3.70 A |
A/C/D/G/I |
333 |
541 |
Spike protein S1 |
Nanobody P2C5 |
| 88 |
pdb_00007wd2
|
7WD2
|
X-ray |
2.69 A |
A/B |
333 |
530 |
Spike protein S1 |
Anti-RON nanobody |
| 89 |
pdb_00007yco
|
7YCO
|
X-ray |
1.96 A |
A |
333 |
530 |
Spike protein S1 |
Repebody (A6) |
| 90 |
pdb_00008cwu
|
8CWU
|
X-ray |
1.71 A |
A |
333 |
530 |
Spike protein S1 |
VHH 1-21 |
| 91 |
pdb_00008gpy
|
8GPY
|
X-ray |
2.51 A |
A/B |
333 |
530 |
Spike protein S1 |
scFv |
| 92 |
pdb_00008gz5
|
8GZ5
|
X-ray |
1.70 A |
A |
333 |
530 |
Spike protein S1 |
Nanobody P17 |
| 93 |
pdb_00007x2m
|
7X2M
|
X-ray |
1.80 A |
E |
333 |
529 |
Spike protein S1 |
1-2C7 |
| 94 |
pdb_00007b14
|
7B14
|
EM |
2.79 A |
A |
333 |
528 |
Spike protein S1 |
Nanobody against SARS-CoV-2 |
| 95 |
pdb_00007kgj
|
7KGJ
|
X-ray |
2.30 A |
A |
333 |
528 |
Spike glycoprotein |
Sb45, Sybody-45, Synthetic Nanobody |
| 96 |
pdb_00007wd1
|
7WD1
|
X-ray |
2.50 A |
A/B |
333 |
528 |
Spike protein S1 |
R14 |
| 97 |
pdb_00007x2l
|
7X2L
|
X-ray |
2.40 A |
E |
333 |
528 |
Spike protein S1 |
Nanobody 3-2A2-4 |
| 98 |
pdb_00008jys
|
8JYS
|
EM |
4.50 A |
B/D |
333 |
528 |
Spike protein S1 |
IBT-CoV144 nanobody |
| 99 |
pdb_00007e3j
|
7E3J
|
X-ray |
2.99 A |
B |
333 |
527 |
Spike protein S1 |
ACE2 |
| 100 |
pdb_00007f5r
|
7F5R
|
X-ray |
3.01 A |
C/E/F |
333 |
527 |
Spike protein S1 |
Mink ACE2 |
| 101 |
pdb_00007kgk
|
7KGK
|
EM |
2.60 A |
A |
333 |
527 |
Spike protein S1 |
Sb16, Sybody-16, Synthetic Nanobody |
| 102 |
pdb_00007z8o
|
7Z8O
|
X-ray |
0.96 A |
A |
333 |
527 |
Spike protein S1 |
Stapled peptide |
| 103 |
pdb_00008aaa
|
8AAA
|
X-ray |
1.90 A |
A |
333 |
527 |
Spike protein S1 |
Stapled peptide |
| 104 |
pdb_00008dce
|
8DCE
|
X-ray |
3.16 A |
E |
333 |
526 |
Spike protein S1 |
C144 scFv |
| 105 |
pdb_00007fat
|
7FAT
|
X-ray |
3.70 A |
E |
333 |
526 |
Spike protein S1 |
NB_1A7 |
| 106 |
pdb_00007fau
|
7FAU
|
X-ray |
2.30 A |
E |
333 |
526 |
Spike protein S1 |
NB_1B11 |
| 107 |
pdb_00007deo
|
7DEO
|
X-ray |
2.96 A |
E |
333 |
519 |
Spike protein S1 |
Antibody scFv |
| 108 |
pdb_00007det
|
7DET
|
EM |
3.60 A |
G |
333 |
516 |
Spike protein S1 |
Antibody scFv |
| 109 |
pdb_00007deu
|
7DEU
|
X-ray |
3.24 A |
C/E |
334 |
541 |
Spike protein S1 |
Antibody scFv |
| 110 |
pdb_00007f15
|
7F15
|
EM |
3.06 A |
B |
334 |
534 |
Spike protein S1 |
Antibody |
| 111 |
pdb_00007b17
|
7B17
|
X-ray |
2.65 A |
A |
334 |
530 |
Spike protein S1 |
SARS-CoV-2 neutralizing biparatopic nanobody VE, nanobody E from Lama glama, SARS-CoV-2 neutralizing biparatopic nanobody VE, nanobody E from Lama glama |
| 112 |
pdb_00007f12
|
7F12
|
EM |
3.08 A |
B |
334 |
529 |
Spike protein S1 |
Antibody |
| 113 |
pdb_00007n9a
|
7N9A
|
EM |
3.36 A |
B |
334 |
529 |
Spike protein S1 |
Nanobody Nb21 |
| 114 |
pdb_00007f0x
|
7F0X
|
X-ray |
3.45 A |
A/E |
334 |
528 |
Spike protein S1 |
Antibody |
| 115 |
pdb_00007x7d
|
7X7D
|
EM |
4.18 A |
C |
334 |
527 |
Spike protein S1 |
NB22 |
| 116 |
pdb_00007x7e
|
7X7E
|
EM |
3.80 A |
C |
334 |
527 |
Spike protein S1 |
NB22 |
| 117 |
pdb_00008bec
|
8BEC
|
EM |
3.27 A |
B/C |
334 |
527 |
Spike protein S1 |
pT1375 single-chain Fv |
| 118 |
pdb_00008bg2
|
8BG2
|
EM |
4.40 A |
A |
334 |
527 |
Spike protein S1 |
pT1375 single-chain Fv |
| 119 |
pdb_00008bg3
|
8BG3
|
X-ray |
2.10 A |
A |
334 |
527 |
Spike protein S1 |
pT1610 single-chain Fv |
| 120 |
pdb_00008bg4
|
8BG4
|
X-ray |
1.70 A |
B/D |
334 |
527 |
Spike protein S1 |
pT1611 single-chain Fv |
| 121 |
pdb_00008bg5
|
8BG5
|
X-ray |
2.88 A |
C/F/I/L |
334 |
527 |
Spike protein S1 |
pT1631 single-chain Fv |
| 122 |
pdb_00008h91
|
8H91
|
X-ray |
1.60 A |
B/D |
334 |
527 |
Spike protein S1 |
Nanobody |
| 123 |
pdb_00007vmu
|
7VMU
|
X-ray |
3.19 A |
E/F |
334 |
515 |
Spike protein S1 |
scFv E4 |
| 124 |
pdb_00007fg2
|
7FG2
|
EM |
4.40 A |
A |
1 |
1273 |
Spike glycoprotein |
K-874A VHH |
| 125 |
pdb_00007fg3
|
7FG3
|
EM |
3.90 A |
A |
1 |
1273 |
Spike glycoprotein |
K-874A VHH |
| 126 |
pdb_00008cxn
|
8CXN
|
EM |
2.90 A |
A/B/C |
1 |
1273 |
Spike glycoprotein |
Pan-sarbecovirus nanobody 2-57 |
| 127 |
pdb_00008cxq
|
8CXQ
|
EM |
2.30 A |
A/B/C |
1 |
1273 |
Spike glycoprotein |
Pan-sarbecovirus nanobody 1-22 |
| 128 |
pdb_00008cy6
|
8CY6
|
EM |
3.20 A |
A/B/C |
1 |
1273 |
Spike glycoprotein |
Pan-sarbecovirus nanobody 2-65 |
| 129 |
pdb_00008cy7
|
8CY7
|
EM |
2.90 A |
A/B/C |
1 |
1273 |
Spike glycoprotein |
Pan-sarbecovirus nanobody 2-38 |
| 130 |
pdb_00008cy9
|
8CY9
|
EM |
2.90 A |
A/B/C |
1 |
1273 |
Spike glycoprotein |
Pan-sarbecovirus nanobody 1-23 |
| 131 |
pdb_00008cya
|
8CYA
|
EM |
2.70 A |
A/B/C |
1 |
1273 |
Spike glycoprotein |
Pan-sarbecovirus nanobody 2-67 |
| 132 |
pdb_00008cyb
|
8CYB
|
EM |
2.70 A |
A/B/C |
1 |
1273 |
Spike glycoprotein |
Pan-sarbecovirus nanobody 1-8 |
| 133 |
pdb_00008cyc
|
8CYC
|
EM |
2.90 A |
A/B/C |
1 |
1273 |
Spike glycoprotein |
Pan-sarbecovirus nanobody 2-34 |
| 134 |
pdb_00006z43
|
6Z43
|
EM |
3.30 A |
A/B/C |
1 |
1208 |
Spike glycoprotein |
Nanobody |
| 135 |
pdb_00006zhd
|
6ZHD
|
EM |
3,70 A |
A/B/C |
1 |
1208 |
Spike glycoprotein, Fibritin |
Nanobody H11-H4 |
| 136 |
pdb_00006zxn
|
6ZXN
|
EM |
2.93 A |
A/B/C |
1 |
1208 |
Spike glycoprotein |
Nanobody Ty1 |
| 137 |
pdb_00007a29
|
7A29
|
EM |
2.94 A |
A/B/C |
1 |
1208 |
Spike glycoprotein |
Neutralising sybody (Sb23) |
| 138 |
pdb_00007jwb
|
7JWB
|
EM |
6.00 A |
A/B/C |
1 |
1208 |
Spike glycoprotein |
Autonomous human heavy chain variable domain |
| 139 |
pdb_00007jzl
|
7JZL
|
EM |
2.70 A |
A/B/C |
1 |
1208 |
Spike glycoprotein |
LCB1 |
| 140 |
pdb_00007jzm
|
7JZM
|
EM |
3.50 A |
B |
1 |
1208 |
Spike glycoprotein |
LCB3 |
| 141 |
pdb_00007jzn
|
7JZN
|
EM |
3.10 A |
A/B/C |
1 |
1208 |
Spike glycoprotein |
LCB3 |
| 142 |
pdb_00007jzu
|
7JZU
|
EM |
3.10 A |
B |
1 |
1208 |
Spike glycoprotein |
LCB1 |
| 143 |
pdb_00007kkk
|
7KKK
|
EM |
3.03 A |
A/C/E |
1 |
1208 |
Spike glycoprotein |
Synthetic nanobody Nb6 |
| 144 |
pdb_00007kkl
|
7KKL
|
EM |
2.85 A |
A/C/D |
1 |
1208 |
Spike glycoprotein |
Synthetic nanobody mNb6 |
| 145 |
pdb_00007kl9
|
7KL9
|
EM |
4.10 A |
A/B/C |
1 |
1208 |
Spike glycoprotein |
CTC-445.2 inhibitor |
| 146 |
pdb_00007ksg
|
7KSG
|
EM |
3.33 A |
A/B/C |
1 |
1208 |
Spike glycoprotein |
Nanobody against SARS-CoV-2 glycoprotein |
| 147 |
pdb_00007mjh
|
7MJH
|
EM |
2.66 A |
A/B/C |
1 |
1208 |
Spike glycoprotein |
VH ab8 |
| 148 |
pdb_00007mji
|
7MJI
|
EM |
2.81 A |
B |
1 |
1208 |
Spike glycoprotein |
VH ab8 |
| 149 |
pdb_00007my2
|
7MY2
|
EM |
2.65 A |
B/C/E |
1 |
1208 |
Spike glycoprotein |
Nanobody Nb30 |
| 150 |
pdb_00007my3
|
7MY3
|
EM |
2.90 A |
A/B/C |
1 |
1208 |
Spike glycoprotein |
Nanobody Nb12 |
| 151 |
pdb_00007n0g
|
7N0G
|
EM |
3.02 A |
A/B/C |
1 |
1208 |
Spike glycoprotein |
Synthetic nanobody (sybody), Sb45 |
| 152 |
pdb_00007n0h
|
7N0H
|
EM |
3.34 A |
A/B/C |
1 |
1208 |
Spike glycoprotein |
Synthetic nanobody (Sb45) |
| 153 |
pdb_00007n9b
|
7N9B
|
EM |
3.80 A |
A/B/C |
1 |
1208 |
Spike glycoprotein |
NB21 Nanobody |
| 154 |
pdb_00007n9c
|
7N9C
|
EM |
3.71 A |
A/B/C |
1 |
1208 |
Spike glycoprotein |
Nanobody NB95 |
| 155 |
pdb_00007n9e
|
7N9E
|
EM |
3.52 A |
A/B/C |
1 |
1208 |
Spike glycoprotein |
Nb34 nanobody |
| 156 |
pdb_00007ns6
|
7NS6
|
EM |
3.18 A |
I/J/K/L/M/N |
1 |
1208 |
Spike glycoprotein, Fibritin |
Fu2 nanobody |
| 157 |
pdb_00007oan
|
7OAN
|
EM |
3.00 A |
A/B/C |
1 |
1208 |
Spike glycoprotein |
Immunoglobulin mu heavy chain |
| 158 |
pdb_00007p79
|
7P79
|
EM |
4.00 A |
A/C/E/ |
1 |
1208 |
Spike glycoprotein |
sybody#15 |
| 159 |
pdb_00007p7a
|
7P7A
|
EM |
4.76 A |
B/C/E/ |
1 |
1208 |
Spike glycoprotein |
sybody#68 |
| 160 |
pdb_00007r4i
|
7R4I
|
EM |
3.20 A |
A/B/C |
1 |
1208 |
Spike glycoprotein |
Camel-derived nanobody 2.15 |
| 161 |
pdb_00007r4q
|
7R4Q
|
EM |
3.60 A |
A/B/C |
1 |
1208 |
Spike glycoprotein |
Camel-derived nanobody 1.29 |
| 162 |
pdb_00007r4r
|
7R4R
|
EM |
3.90 A |
A/B/C |
1 |
1208 |
Spike glycoprotein |
Camel-derived nanobody 1.10 |
| 163 |
pdb_00007uhb
|
7UHB
|
EM |
3.00 A |
C |
1 |
1208 |
Spike glycoprotein |
Multivalent miniprotein inhibitor AHB2-2GS-SB175 |
| 164 |
pdb_00007uhc
|
7UHC
|
EM |
3.10 A |
A/B/D |
1 |
1208 |
Spike glycoprotein |
Multivalent miniprotein inhibitor AHB2-2GS-SB175 |
| 165 |
pdb_00007vq0
|
7VQ0
|
EM |
3.03 A |
A/B/C |
1 |
1208 |
Spike glycoprotein |
Neutralizing nanobody P86 |
| 166 |
pdb_00007x7n
|
7X7N
|
EM |
4.47 A |
A/B/C |
1 |
1208 |
Spike glycoprotein |
Synthetic peptide SIH-5 |
| 167 |
pdb_00007z6v
|
7Z6V
|
EM |
3.10 |
A/B/C |
1 |
1208 |
Spike glycoprotein, Fibritin |
Nanobody H11 |
| 168 |
pdb_00007z7x
|
7Z7X
|
EM |
3.30 |
A/B/C |
1 |
1208 |
Spike glycoprotein, Fibritin |
Nanobody H11-H6 |
| 169 |
pdb_00007z85
|
7Z85
|
EM |
3.10 |
A/B/C |
1 |
1208 |
Spike glycoprotein, Fibritin |
Nanobody H11-B5 |
| 170 |
pdb_00007z86
|
7Z86
|
EM |
3.40 |
A/B/C |
1 |
1208 |
Spike glycoprotein, Fibritin |
Nanobody H11-H4 Q98R H100E |
| 171 |
pdb_00007z9q
|
7Z9Q
|
EM |
3.60 |
A/B/C |
1 |
1208 |
Spike glycoprotein, Fibritin |
Nanobody H11-A10 |
| 172 |
pdb_00007z9r
|
7Z9R
|
EM |
4.20 |
A/B/C |
1 |
1208 |
Spike glycoprotein, Fibritin |
Nanobody H11-H4 Q98R H100E |
| 173 |
pdb_00007zce
|
7ZCE
|
EM |
3.50 |
A/B/C |
1 |
1208 |
Spike glycoprotein, Fibritin |
scFv76 single chain fragment |
| 174 |
pdb_00007zcf
|
7ZCF
|
EM |
4.00 |
C |
1 |
1208 |
Spike glycoprotein, Fibritin |
scFv76 single chain fragment |
| 175 |
pdb_00007zrv
|
7ZRV
|
EM |
2.80 |
A/B/C |
1 |
1208 |
Spike glycoprotein, Envelope glycoprotein |
De novo designed binder |
| 176 |
pdb_00008bev
|
8BEV
|
EM |
5.92 A |
A/C |
1 |
1208 |
Spike glycoprotein |
Immunoglobulin mu heavy chain |
| 177 |
pdb_00008c8p
|
8C8P
|
EM |
4.10 A |
A |
1 |
1208 |
Spike glycoprotein, SARS-CoV-2 spike glycoprotein |
Heavy-chain-only antibody 10D12 |
| 178 |
pdb_00008di5
|
8DI5
|
EM |
3.04 A |
C |
1 |
1208 |
Spike glycoprotein |
VH F6 |
| 179 |
pdb_00008dlx
|
8DLX
|
EM |
2.45 A |
A/B/C |
1 |
1208 |
Spike glycoprotein |
VH ab6 |
| 180 |
pdb_00008dly
|
8DLY
|
EM |
3.00 A |
C |
1 |
1208 |
Spike glycoprotein |
VH ab6 |
| 181 |
pdb_00008dlz
|
8DLZ
|
EM |
2.57 A |
A/B/C |
1 |
1208 |
Spike glycoprotein |
VH ab6 |
| 182 |
pdb_00008dm0
|
8DM0
|
EM |
3.21 A |
C |
1 |
1208 |
Spike glycoprotein |
VH ab6 |
| 183 |
pdb_00008h6f
|
8H6F
|
EM |
3.30 A |
A/B/C |
1 |
1208 |
Spike glycoprotein |
Repebody (A6) |
| 184 |
pdb_00008k46
|
8K46
|
EM |
3.37 A |
A/B/C |
1 |
1208 |
Spike glycoprotein |
Nanobody Nb4 |
| 185 |
pdb_00008k47
|
8K47
|
EM |
3.54 A |
A/B/C |
1 |
1208 |
Spike glycoprotein |
Nanobody Nb4 |
| 186 |
pdb_00008oyt
|
8OYT
|
EM |
3.80 A |
A/B/C |
1 |
1208 |
Spike glycoprotein, Fibritin |
H6 nanobody |
| 187 |
pdb_00008oyu
|
8OYU
|
EM |
4.00 A |
A/B/C |
1 |
1208 |
Spike glycoprotein, Fibritin |
H6 nanobody |
| 188 |
pdb_00008xki
|
8XKI
|
EM |
3.20 A |
A/B/C |
1 |
1208 |
Spike glycoprotein |
Nanobody VHH60 |
| 189 |
pdb_00009fgr
|
9FGR
|
EM |
4.00 A |
C |
1 |
1208 |
Spike glycoprotein |
scFv76-77 single chain fragment |
| 190 |
pdb_00009fgs
|
9FGS
|
EM |
4.00 A |
C |
1 |
1208 |
Spike glycoprotein, Fibritin |
Single Chain fragment scFv41N |
| 191 |
pdb_00009fgt
|
9FGT
|
EM |
3.80 A |
C |
1 |
1208 |
Spike glycoprotein, Fibritin |
Single Chain fragment scFv76 |
| 192 |
pdb_00009fgu
|
9FGU
|
EM |
4.30 A |
C |
1 |
1208 |
Spike glycoprotein, Fibritin |
scFv76-77 single chain fragment |
| 193 |
pdb_00008bgg
|
8BGG
|
EM |
6.04 A |
B/C |
1 |
1208 |
Spike glycoprotein |
Nanobody W25 |
| 194 |
pdb_00008g72
|
8G72
|
EM |
5.60 A |
B |
14 |
1211 |
Spike glycoprotein |
Nanosota-2 |
| 195 |
pdb_00008g73
|
8G73
|
EM |
2.50 A |
A/B/D |
14 |
1211 |
Spike glycoprotein |
Nanosota-3 |
| 196 |
pdb_00008g74
|
8G74
|
EM |
2.50 A |
A/B/D |
14 |
1211 |
Spike glycoprotein |
Nanosota-3 |
| 197 |
pdb_00008g75
|
8G75
|
EM |
3.40 A |
A/B/D |
14 |
1211 |
Spike glycoprotein |
Nanosota-4 |
| 198 |
pdb_00008g76
|
8G76
|
EM |
3.80 A |
A/B/D |
14 |
1211 |
Spike glycoprotein |
Nanosota-5 |
| 199 |
pdb_00008g77
|
8G77
|
EM |
2.80 A |
A/B/D |
14 |
1211 |
Spike glycoprotein |
Nanosota-6 |
| 200 |
pdb_00008g7a
|
8G7A
|
EM |
3.30 A |
A/B/D |
14 |
1211 |
Spike glycoprotein |
Nanosota-3 |
| 201 |
pdb_00008g7b
|
8G7B
|
EM |
3.20 A |
A/B/D |
14 |
1211 |
Spike glycoprotein |
Nanosota-3 |
| 202 |
pdb_00008g7c
|
8G7C
|
EM |
4.10 A |
A/B/D |
14 |
1211 |
Spike glycoprotein |
Nanosota-4 |
| 203 |
pdb_00008ug9
|
8UG9
|
EM |
3.49 A |
A/B/C |
14 |
1211 |
Spike glycoprotein |
Nanosota-5 |
| 204 |
pdb_00007tyz
|
7TYZ
|
EM |
3.51 A |
A/C/E |
14 |
1208 |
Spike glycoprotein |
DARPin FSR22 |
| 205 |
pdb_00007tz0
|
7TZ0
|
EM |
4.17 A |
A |
14 |
1208 |
Spike glycoprotein |
DARPin FSR22 |
| 206 |
pdb_00007vnc
|
7VNC
|
EM |
3.70 A |
A/B/C |
14 |
1208 |
Spike glycoprotein |
n3113 |
| 207 |
pdb_00007vnd
|
7VND
|
EM |
3.60 A |
A/B/C |
14 |
1208 |
Spike glycoprotein |
n3113 |
| 208 |
pdb_00007vne
|
7VNE
|
EM |
3.50 A |
A/B/C |
14 |
1208 |
Spike glycoprotein |
n3113.1 |
| 209 |
pdb_00008bon
|
8BON
|
EM |
3.20 A |
A/B/C |
14 |
1208 |
Spike glycoprotein |
Macrocyclic peptide S1B3inL1 |
| 210 |
pdb_00008i4e
|
8I4E
|
EM |
3.98 A |
A |
28 |
1210 |
Spike glycoprotein |
Bn03 |
| 211 |
pdb_00008i4f
|
8I4F
|
EM |
3.44 A |
A |
28 |
1210 |
Spike glycoprotein |
n3130v-Fc |
| 212 |
pdb_00008i4g
|
8I4G
|
EM |
3.68 A |
A |
28 |
1210 |
Spike glycoprotein |
n3130v-Fc |