SARS-CoV-2 Ligands Database

THREE LIGANDS ANTIBODIES

№	Extended PDB ID	PDB ID	Method	Resolution	Chain	Start	End	Macromolecules	Ligand 1	Ligand 2	Ligand 3
1	pdb_00008hsm	8HSM	X-ray	2.20 A	C	1052	1060	-	Ig-like domain-containing protein	Beta-2-microglobulin	PHE-PRO-GLN-SER-ALA-PRO-HIS-GLY-VAL
2	pdb_00008hso	8HSO	X-ray	2.10 A	C	1052	1060	-	Ig-like domain-containing protein	Beta-2-microglobulin	PHE-PRO-GLN-SER-ALA-PRO-HIS-GLY-VAL
3	pdb_00008hsw	8HSW	X-ray	2.03 A	C	1053	1060	-	Ig-like domain-containing protein	Beta-2-microglobulin	PHE-PRO-GLN-SER-ALA-PRO-HIS-GLY-VAL
4	pdb_00008ht1	8HT1	X-ray	2.40 A	C	1053	1060	-	Ig-like domain-containing protein	Beta-2-microglobulin	PHE-PRO-GLN-SER-ALA-PRO-HIS-GLY-VAL
5	pdb_00008ht9	8HT9	X-ray	2.20 A	C	1053	1060	-	Ig-like domain-containing protein	Beta-2-microglobulin	PHE-PRO-GLN-SER-ALA-PRO-HIS-GLY-VAL
6	pdb_00007sl5	7SL5	X-ray	2.50 A	C/F/I/L	811	825	-	Heavy chain VP12E7 Fab	Light chain VP12E7 Fab	PRO-SER-LYS-ARG-SER-PHE-ILE-GLU-ASP-LEU-LEU-PHE-ASN
7	pdb_00008d47	8D47	X-ray	2.00 A	C/D	812	831	-	fp.006 heavy chain	fp.006 heavy chain	SARS-CoV-2 fusion peptide
8	pdb_00007skz	7SKZ	X-ray	1.86 A	A	812	824	-	PRO-SER-LYS-ARG-SER-PHE-ILE-GLU-ASP-LEU-LEU-PHE-ASN	Heavy chain of VN01H1 Fab	Light chain of VN01H1 Fab
9	pdb_00007y0n	7Y0N	EM	3.80 A	A/B/D	1	1147	Spike glycoprotein	Heavy chain of R15-F7	P14 Nanobody	Light chain of R15-F7
10	pdb_00007wbh	7WBH	EM	3.70 A	A/B/C	27	1146	Spike glycoprotein	Heavy chain of hu33	Light chain of hu33	Light chain of hu33
11	pdb_00008j1v	8J1V	EM	3.01 A	A/B/E	27	1141	Spike glycoprotein	Spike protein S2'	8-9D heavy chain	8-9D light chain
12	pdb_00007tcq	7TCQ	X-ray	2.02 A	C/D	1148	1157	Pegylated spike S2 peptide	Anti-SARS-CoV-2 antibody WS6 Fab heavy chain	Anti-SARS-CoV-2 antibody WS6 Fab light chain	Anti-SARS-CoV-2 antibody WS6 Fab light chain
13	pdb_00008hn4	8HN4	X-ray	2.85 A	E	1208	1216	-	MHC class I antigen	Beta-2-microglobulin	SARS-CoV-2 T-cell epitope QYIKWPWYI
14	pdb_00007p3e	7P3E	X-ray	2.00 A	C/F	269	277	-	MHC class I antigen	Beta-2-microglobulin	TYR-LEU-GLN-LEU-ARG-THR-PHE-LEU-LEU
15	pdb_00007kn6	7KN6	X-ray	2.55	A	319	541	Spike protein S1	CC12.3 Fab heavy chain	VHH V	CC12.3 Fab light chain
16	pdb_00007kn7	7KN7	X-ray	2.73	A	319	541	Spike protein S1	VHH W	CC12.3 Fab heavy chain	CC12.3 Fab light chain
17	pdb_00006yz7	6YZ7	X-ray	3.30 A	AAA/EEE	330	532	Spike glycoprotein	Antibody Cr3022	Antibody light chain	Nanobody
18	pdb_00006z2m	6Z2M	X-ray	2.71 A	A/E	332	528	Spike glycoprotein	CR3022 antibody	CR3022 antibody	Nanobody D4
19	pdb_00006zh9	6ZH9	X-ray	3.31 A	EEE	332	528	Spike glycoprotein	CR3022 Heavy chain	CR3022 Light chain	Nanobody H11-H4
20	pdb_00008cwv	8CWV	X-ray	2.51 A	A	333	530	Spike protein S1	VHH 2-31	CC12.1 Fab heavy chain	CC12.1 Fab light chain
21	pdb_00008elo	8ELO	X-ray	2.72 A	A	333	530	Spike protein S1	Nanobody Nb-C4-225	CC12.1 Fab heavy chain	CC12.1 Fab light chain
22	pdb_00008elp	8ELP	X-ray	2.83 A	A	333	530	Spike protein S1	Nanobody Nb-C4-240	CC12.1 Fab heavy chain	CC12.1 Fab light chain
23	pdb_00008elq	8ELQ	X-ray	2.21 A	A	333	530	Spike protein S1	Nanobody Nb-C4-255	CC12.1 Fab heavy chain	CC12.1 Fab light chain
24	pdb_00006zcz	6ZCZ	X-ray	2.65 A	E	333	528	Spike protein S1	Nanobody	EY6A heavy chain	EY6A light chain
25	pdb_00007zxu	7ZXU	X-ray	1.89 A	E	333	528	Spike protein S1	Beta-27 heavy chain	Nanobody C1	Beta-27 light chain
26	pdb_00008bh5	8BH5	X-ray	2.38 A	E	333	528	Spike protein S1	Beta-27 heavy chain	Beta-27 light chain	Nanobody C1
27	pdb_00008c3v	8C3V	X-ray	2.74 A	R/X/Y	333	528	Spike protein S1	BA.2-13 light chain	BA.2-13 heavy chain	Nanobody C1
28	pdb_00007x2k	7X2K	EM	3.40 A	E	333	526	Spike protein S1	1F11-H	1F11-L	Nb70
29	pdb_00007zf4	7ZF4	X-ray	2.60 A	E	333	526	Spike protein S1	Nanobody F2	Omi-9 heavy chain	Omi-9 light chain
30	pdb_00007zfe	7ZFE	X-ray	3.25 A	C/E	333	526	Spike protein S1	Nanobody C1	Omi-32 heavy chain	Omi-32 light chain
31	pdb_00008qrg	8QRG	EM	2.80 A	E	333	526	Spike protein S1	NbC1	XBB-2 heavy chain	XBB-2 light chain
32	pdb_00008r80	8R80	EM	2.60 A	E	333	526	Spike protein S1	Anti-Fab nanobody	XBB-9 Fab heavy chain	XBB-9 Fab light chain
33	pdb_00007y0o	7Y0O	X-ray	2.92 A	A/D/E	334	527	Spike protein S1	Heavy chain of R15	Light chain of R15	P14 nanobody
34	pdb_00007xod	7XOD	EM	3.27 A	A/B/C	1	1273	Spike glycoprotein	Heavy chain of JMB2002 Fab	Light chain of JMB2002 Fab	Nanobody
35	pdb_00008yww	8YWW	EM	2.70 A	A/B/C	1	1210	Spike glycoprotein	H4B6 heavy chain	H4B6 light chain	The scfv of H4D12
36	pdb_00007eya	7EYA	EM	3.77 A	R	1	1208	Spike glycoprotein	Spike glycoprotein	BD-804L	BD-804H
37	pdb_00007ey4	7EY4	EM	3.69 A	R	1	1208	Spike glycoprotein	Spike glycoprotein	BD-667 L	BD-667 H